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README.md
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README.md
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@ -66,7 +66,7 @@ If you are just starting out, I reccomend reading all the papers in the 'Survey'
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*Extends predictive coding to generalised coordinates, and derives the necessary inference algorithms for working with them -- i.e. DEM, dynamic expectation maximisation.*
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- [**Generalised filtering**](https://www.hindawi.com/journals/mpe/2010/621670/) , (2010) by *Friston, Karl, Stephan, Klaas, Li, Baojuan and Daunizeau, Jean* [[bib]](bibtex.bib#L215-L224)
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- [**Surfing uncertainty: Prediction, action, and the embodied mind**](https://books.google.co.uk/books?hl=en&lr=&id=TnqECgAAQBAJ&oi=fnd&pg=PP1&dq=andy+clark+surfing+uncertainty&ots=aurm4jE3NO&sig=KxeHGJ6YJJdN9tKyr6snwDyBBKg&redir_esc=y#v=onepage&q=andy%20clark%20surfing%20uncertainty&f=false) , (2015) by *Clark, Andy* [[bib]](bibtex.bib#L322-L329)
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- [**Variational filtering**](https://www.sciencedirect.com/science/article/pii/S1053811908002462?casa_token=bzK7h_aIzY0AAAAA:rg1CzE6vNo-cktIHO_9EAoqmR5Zpy89klEn-Wy3NAzMoR8NcWgaF5_zEzyhrRB76N5RPyCZTIlY) , (2008) by *Friston, Karl J* [[bib]](bibtex.bib#L854-L865)
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- [**Variational filtering**](https://www.sciencedirect.com/science/article/pii/S1053811908002462?casa_token=bzK7h_aIzY0AAAAA:rg1CzE6vNo-cktIHO_9EAoqmR5Zpy89klEn-Wy3NAzMoR8NcWgaF5_zEzyhrRB76N5RPyCZTIlY) , (2008) by *Friston, Karl J* [[bib]](bibtex.bib#L855-L866)
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*Foundational treatment of variational inference for dynamical systems, as represented in generalised coordinates. Also relates variational filtering to other non-variational schemes like particle filtering and Kalman filtering.*
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@ -82,11 +82,11 @@ If you are just starting out, I reccomend reading all the papers in the 'Survey'
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- [**Predictive processing and the representation wars**](https://link.springer.com/article/10.1007/s11023-017-9441-6) , (2018) by *Williams, Daniel* [[bib]](bibtex.bib#L288-L299)
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- [**Whatever next? Predictive brains, situated agents, and the future of cognitive science**](https://www.cambridge.org/core/journals/behavioral-and-brain-sciences/article/whatever-next-predictive-brains-situated-agents-and-the-future-of-cognitive-science/33542C736E17E3D1D44E8D03BE5F4CD9) , (2013) by *Clark, Andy* [[bib]](bibtex.bib#L300-L311)
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- [**Predictions in the eye of the beholder: an active inference account of Watt governors**](https://www.mitpressjournals.org/doi/abs/10.1162/isal_a_00288) , (2020) by *Baltieri, Manuel, Buckley, Christopher L and Bruineberg, Jelle* [[bib]](bibtex.bib#L312-L321)
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- [**From allostatic agents to counterfactual cognisers: active inference, biological regulation, and the origins of cognition**](https://link.springer.com/article/10.1007/s10539-020-09746-2) , (2020) by *Corcoran, Andrew W, Pezzulo, Giovanni and Hohwy, Jakob* [[bib]](bibtex.bib#L795-L806)
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- [**Interoceptive inference, emotion, and the embodied self**](https://www.sciencedirect.com/science/article/pii/S1364661313002118) , (2013) by *Seth, Anil K* [[bib]](bibtex.bib#L807-L818)
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- [**Active interoceptive inference and the emotional brain**](https://royalsocietypublishing.org/doi/full/10.1098/rstb.2016.0007) , (2016) by *Seth, Anil K and Friston, Karl J* [[bib]](bibtex.bib#L819-L830)
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- [**The cybernetic Bayesian brain**](https://open-mind.net/papers/the-cybernetic-bayesian-brain) , (2014) by *Seth, Anil K* [[bib]](bibtex.bib#L831-L838)
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- [**Presence, objecthood, and the phenomenology of predictive perception**](https://www.tandfonline.com/doi/full/10.1080/17588928.2015.1026888?casa_token=IA7GL_oM2VAAAAAA%3AXkJ7HbhxHcW7qCdSWyRSerOo8iZevM3x_8QV1b7C7qAvAqJMveeq4IeGRBTCCbQOCJ6Ix9p70VkKww) , (2015) by *Seth, Anil K* [[bib]](bibtex.bib#L839-L850)
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- [**From allostatic agents to counterfactual cognisers: active inference, biological regulation, and the origins of cognition**](https://link.springer.com/article/10.1007/s10539-020-09746-2) , (2020) by *Corcoran, Andrew W, Pezzulo, Giovanni and Hohwy, Jakob* [[bib]](bibtex.bib#L796-L807)
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- [**Interoceptive inference, emotion, and the embodied self**](https://www.sciencedirect.com/science/article/pii/S1364661313002118) , (2013) by *Seth, Anil K* [[bib]](bibtex.bib#L808-L819)
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- [**Active interoceptive inference and the emotional brain**](https://royalsocietypublishing.org/doi/full/10.1098/rstb.2016.0007) , (2016) by *Seth, Anil K and Friston, Karl J* [[bib]](bibtex.bib#L820-L831)
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- [**The cybernetic Bayesian brain**](https://open-mind.net/papers/the-cybernetic-bayesian-brain) , (2014) by *Seth, Anil K* [[bib]](bibtex.bib#L832-L839)
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- [**Presence, objecthood, and the phenomenology of predictive perception**](https://www.tandfonline.com/doi/full/10.1080/17588928.2015.1026888?casa_token=IA7GL_oM2VAAAAAA%3AXkJ7HbhxHcW7qCdSWyRSerOo8iZevM3x_8QV1b7C7qAvAqJMveeq4IeGRBTCCbQOCJ6Ix9p70VkKww) , (2015) by *Seth, Anil K* [[bib]](bibtex.bib#L840-L851)
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## Self-Organisation and Markov Blankets
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- [**Life as we know it**](https://royalsocietypublishing.org/doi/full/10.1098/rsif.2013.0475) , (2013) by *Friston, Karl* [[bib]](bibtex.bib#L330-L341)
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@ -166,7 +166,7 @@ The task of inferring actions (requiring detailed models of future outcomes give
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- [**The State Space Formulation of Active Inference: Towards Brain-Inspired Robot Control**](https://repository.tudelft.nl/islandora/object/uuid:0f56c37c-d22b-478b-8a85-dca615a8f419) , (2019) by *Grimbergen, Sherin* [[bib]](bibtex.bib#L726-L732)
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*An excellent overview and fantastic piece of work on the linear time-indepenent formulation of active inference and its relation to classical control theory.*
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- **Hierarchical active inference: A theory of motivated control**, (2018) by *Pezzulo, Giovanni, Rigoli, Francesco and Friston, Karl J* [[bib]](bibtex.bib#L784-L794)
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- [**Hierarchical active inference: A theory of motivated control**](https://www.sciencedirect.com/science/article/pii/S1364661318300226) , (2018) by *Pezzulo, Giovanni, Rigoli, Francesco and Friston, Karl J* [[bib]](bibtex.bib#L784-L795)
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## Message Passing and Free Energies
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- [**The graphical brain: belief propagation and active inference**](https://www.mitpressjournals.org/doi/full/10.1162/NETN_a_00018) , (2017) by *Friston, Karl J, Parr, Thomas and de Vries, Bert* [[bib]](bibtex.bib#L504-L515)
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@ -790,7 +790,8 @@
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pages={294--306},
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year={2018},
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publisher={Elsevier},
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keywords={continuous}
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keywords={continuous},
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url={https://www.sciencedirect.com/science/article/pii/S1364661318300226},
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}
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@article{corcoran2020allostatic,
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title={From allostatic agents to counterfactual cognisers: active inference, biological regulation, and the origins of cognition},
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